JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF2S1_chr14_67355328_67391516	0/0	t0015	3204	3	0	0	2	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0016	3206	2	0	0	2	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0017	3206	2	2	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0018	3206	2	2	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0019	3206	2	1	1	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0020	3204	2	2	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0021	3206	1	0	0	0	1	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0022	3207	1	0	0	1	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0023	3202	1	0	1	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0024	3205	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0025	3203	1	0	1	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0026	3207	1	0	0	1	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0027	3205	1	0	0	0	1	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0028	3207	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0029	3207	1	0	1	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0030	3208	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0031	3207	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0032	3208	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0033	3206	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0034	3204	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0035	3206	1	0	0	0	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0036	3203	1	0	0	1	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0037	3206	1	0	0	1	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0038	3207	1	0	0	1	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0039	3205	1	0	0	0	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0040	3205	1	0	0	0	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0041	3205	1	0	0	1	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0042	3205	1	0	1	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0043	3206	1	1	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S2_chr20_34083309_34117243	0/1	t0001	1529	174	15	30	86	13	29	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	1/0	t0002	1555	145	40	29	55	5	15	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0003	1555	19	15	4	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0004	1556	8	8	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0005	1529	3	0	0	3	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0006	1555	2	2	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0007	1555	1	1	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0008	1529	1	0	0	1	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0009	1555	1	1	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0010	1555	1	0	1	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0011	1555	1	1	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0012	1555	1	1	0	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0013	1555	1	0	1	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0014	1555	1	0	1	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0015	1555	1	0	1	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0016	1555	1	0	0	1	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S2_chr20_34083309_34117243	0/0	t0017	1555	1	0	1	0	0	0	copy fasta	EIF2S2	chr20	34083309	34117243
EIF2S3B_chr12_10500890_10513525	0/1	t0001	1218	334	59	53	172	14	35	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0002	1218	34	0	9	16	4	5	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0003	1211	21	18	3	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0004	1217	11	8	3	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525