JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF2S3B_chr12_10500890_10513525	0/0	t0005	1218	5	0	0	0	0	5	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	1/0	t0006	1218	3	2	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0007	1218	3	3	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0008	1218	2	0	2	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0009	1218	2	0	0	2	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0010	1218	2	2	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0011	1218	1	1	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0012	1218	1	0	0	0	0	1	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0013	1218	1	0	0	1	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0014	1218	1	0	0	1	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3B_chr12_10500890_10513525	0/0	t0015	1218	1	1	0	0	0	0	copy fasta	EIF2S3B	chr12	10500890	10513525
EIF2S3_chrX_24049956_24083810	0/1	t0001	2039	85	10	24	40	5	5	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0002	2038	78	12	7	50	0	9	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0003	2044	19	12	3	4	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	1/0	t0004	2039	17	1	3	7	2	3	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0005	2038	16	2	5	0	3	6	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0006	2038	13	4	2	6	1	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0007	2045	9	8	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0008	2040	6	1	1	3	0	1	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0009	2039	5	1	0	3	0	1	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0010	2039	5	0	5	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0011	2046	4	3	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0012	2035	3	0	0	3	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0013	2037	3	0	1	2	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0014	2034	2	2	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0015	2037	2	1	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0016	2039	2	0	0	0	0	2	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0017	2045	2	1	0	0	0	1	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0018	2051	2	2	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0019	2038	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0020	2028	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0021	2035	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0022	2036	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0023	2037	1	0	0	0	0	1	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0024	2031	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0025	2047	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0026	2038	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0027	2038	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0028	2038	1	0	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0029	2038	1	0	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0030	2040	1	0	0	0	0	1	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0031	2044	1	0	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0032	2045	1	0	1	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0033	2045	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0034	2046	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0035	2047	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0036	2047	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0037	2050	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0038	2030	1	1	0	0	0	0	copy fasta	EIF2S3	chrX	24049956	24083810
EIF2S3_chrX_24049956_24083810	0/0	t0039	2035	1	0	0	1	0	0	copy fasta	EIF2S3	chrX	24049956	24083810