JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF3A_chr10_119028670_119085817	0/0	t0001	2509	101	10	19	52	5	15	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/1	t0002	2506	100	11	19	52	9	8	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0003	2510	69	27	13	22	2	5	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0004	2510	11	2	0	9	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0005	2511	11	11	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0006	2511	11	0	0	9	0	2	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0007	2511	7	7	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	1/0	t0008	2511	6	4	1	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0009	2511	5	5	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0010	2509	4	0	4	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0011	2511	4	0	0	4	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0012	2510	4	4	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0013	2509	3	1	1	0	0	1	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0014	2511	3	3	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0015	2509	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0016	2506	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0017	2511	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0018	2510	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0019	2510	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0020	2510	1	0	1	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0021	2510	1	1	0	0	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0022	2510	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0023	2510	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0024	2506	1	0	0	1	0	0	copy fasta	EIF3A	chr10	119028670	119085817
EIF3A_chr10_119028670_119085817	0/0	t0025	2506	1	0	0	0	0	1	copy fasta	EIF3A	chr10	119028670	119085817
EIF3B_chr7_2349827_2385745	1/0	t0001	652	355	84	75	141	13	41	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0002	652	5	4	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0003	653	4	0	2	1	0	1	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0004	652	3	0	0	3	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0005	652	3	2	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0006	652	2	1	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0007	652	2	0	1	0	1	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0008	652	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0009	652	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0010	652	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0011	652	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0012	652	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0013	652	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0014	676	1	0	0	1	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/1	t0015	652	1	0	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0016	652	1	1	0	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3B_chr7_2349827_2385745	0/0	t0017	652	1	0	1	0	0	0	copy fasta	EIF3B	chr7	2349827	2385745
EIF3CL_chr16_28374715_28408841	0/0	t0001	169	164	46	23	70	6	19	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3CL_chr16_28374715_28408841	0/0	t0002	169	8	6	1	0	0	1	copy fasta	EIF3CL	chr16	28374715	28408841
EIF3C_chr16_28706464_28740596	0/0	t0001	169	100	18	2	58	0	22	copy fasta	EIF3C	chr16	28706464	28740596
EIF3D_chr22_36505855_36534166	1/1	t0001	234	388	90	62	180	12	42	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	t0002	234	10	0	10	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	t0003	234	1	1	0	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3D_chr22_36505855_36534166	0/0	t0004	234	1	1	0	0	0	0	copy fasta	EIF3D	chr22	36505855	36534166
EIF3E_chr8_108196216_108253717	1/0	t0001	685	108	4	22	70	2	9	copy fasta	EIF3E	chr8	108196216	108253717