JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF3E_chr8_108196216_108253717	0/1	t0002	689	74	5	3	60	0	5	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0003	685	40	13	11	0	7	9	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0004	707	21	10	3	6	0	2	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0005	711	17	11	0	3	2	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0006	674	14	11	0	0	0	3	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0007	709	12	7	3	1	0	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0008	693	12	0	4	1	2	5	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0009	705	8	0	5	0	0	3	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0010	675	6	5	1	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0011	703	6	3	2	0	0	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0012	691	6	0	0	5	0	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0013	683	5	5	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0014	713	4	3	0	0	0	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0015	717	3	1	1	0	1	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0016	707	2	1	1	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0017	685	1	0	1	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0018	721	1	0	0	1	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0019	715	1	0	1	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0020	701	1	1	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0021	697	1	0	0	0	0	1	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0022	695	1	0	0	1	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0023	711	1	1	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0024	685	1	1	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0025	674	1	1	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3E_chr8_108196216_108253717	0/0	t0026	699	1	1	0	0	0	0	copy fasta	EIF3E	chr8	108196216	108253717
EIF3F_chr11_7982337_8006852	0/0	t0001	5847	177	10	38	100	6	23	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0002	5846	47	4	12	27	1	3	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0003	5852	19	9	6	0	1	3	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0004	5847	14	0	0	14	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0005	5847	11	7	2	0	1	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0006	5847	8	2	0	0	3	3	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0007	5845	8	8	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0008	5847	7	7	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0009	5849	6	5	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0010	5847	6	0	0	1	3	2	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0011	5847	5	4	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0012	5847	5	5	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0013	5847	5	4	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0014	5847	5	4	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/1	t0015	5845	4	0	1	2	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0016	5849	3	3	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0017	5847	3	0	2	0	0	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0018	5845	3	3	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0019	5845	3	0	2	0	1	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0020	5847	2	0	1	0	0	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0021	5847	2	1	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0022	5847	2	0	2	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0023	5847	2	0	0	2	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0024	5847	2	0	0	2	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	1/0	t0025	5847	2	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852