JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF3F_chr11_7982337_8006852	0/0	t0026	5852	2	2	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0027	5852	2	0	2	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0028	5847	2	2	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0029	5847	2	2	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0030	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0031	5847	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0032	5847	1	0	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0033	5847	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0034	5846	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0035	5847	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0036	5846	1	0	0	0	0	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0037	5846	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0038	5847	1	0	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0039	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0040	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0041	5849	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0042	5847	1	0	0	0	0	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0043	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0044	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0045	5847	1	0	0	0	0	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0046	5846	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0047	5847	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0048	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0049	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0050	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0051	5847	1	0	0	0	0	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0052	5847	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0053	5847	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0054	5847	1	0	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0055	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0056	5847	1	0	0	0	1	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0057	5845	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0058	5847	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0059	5846	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0060	5846	1	0	0	1	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0061	5847	1	0	1	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0062	5847	1	0	0	0	0	1	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0063	5847	1	1	0	0	0	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3F_chr11_7982337_8006852	0/0	t0064	5847	1	0	0	0	1	0	copy fasta	EIF3F	chr11	7982337	8006852
EIF3G_chr19_10110014_10124899	1/1	t0001	141	284	81	41	125	9	26	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	t0002	141	170	14	45	78	9	24	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	t0003	141	2	2	0	0	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	t0004	141	1	0	0	1	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3G_chr19_10110014_10124899	0/0	t0005	141	1	1	0	0	0	0	copy fasta	EIF3G	chr19	10110014	10124899
EIF3H_chr8_116637130_116760823	0/1	t0001	2903	77	25	14	22	2	13	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0002	2903	67	1	12	52	1	1	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	1/0	t0003	2903	59	2	9	40	2	5	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0004	2903	38	0	16	19	2	1	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0005	2903	20	13	3	0	1	3	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0006	2903	16	14	2	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823