Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGO3_chr1_35926105_36077500	0/0	t0060	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0061	17078	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0062	17078	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0063	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0064	17078	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0065	17078	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0066	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0067	17078	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0068	17082	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0069	17079	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0070	17077	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0071	17078	1	0	0	0	1	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0072	17079	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0073	17082	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0074	17079	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0075	17079	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0076	17078	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0077	17078	1	0	0	0	0	1	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0078	17075	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0079	17075	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0080	17075	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0081	17075	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0082	17078	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0083	17074	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0084	17078	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0085	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0086	17077	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/1	t0087	17079	1	0	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO4_chr1_35803016_35862890	0/0	t0001	4685	87	27	15	32	7	6	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0002	4688	75	10	13	48	1	3	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/1	t0003	4684	29	18	3	5	0	2	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0004	4684	14	5	0	3	2	4	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0005	4686	12	6	1	1	0	4	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0006	4685	6	3	0	2	0	1	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0007	4693	4	4	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0008	4686	4	2	1	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0009	4685	4	2	2	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0010	4689	3	1	0	2	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0011	4687	2	2	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0012	4687	2	2	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0013	4685	2	2	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0014	4685	2	0	2	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0015	4687	2	2	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0016	4684	2	0	2	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0017	4694	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0018	4690	1	0	0	0	0	1	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0019	4689	1	0	1	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0020	4690	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0021	4685	1	0	1	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0022	4688	1	0	1	0	0	0	copy fasta	AGO4	chr1	35803016	35862890