JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF3H_chr8_116637130_116760823	0/0	t0007	2902	13	12	1	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0008	2903	11	0	0	11	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0009	2903	5	4	1	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0010	2903	4	4	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0011	2902	4	4	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0012	2903	4	4	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0013	2903	3	3	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0014	2903	3	2	1	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0015	2876	2	2	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0016	2903	2	0	0	2	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0017	2903	2	2	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0018	2903	1	1	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0019	2903	1	0	0	0	0	1	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0020	2903	1	1	0	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0021	2903	1	0	0	1	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0022	2903	1	0	0	1	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3H_chr8_116637130_116760823	0/0	t0023	2903	1	0	1	0	0	0	copy fasta	EIF3H	chr8	116637130	116760823
EIF3I_chr1_32217407_32236604	1/1	t0001	444	287	63	48	134	13	27	copy fasta	EIF3I	chr1	32217407	32236604
EIF3I_chr1_32217407_32236604	0/0	t0002	444	71	8	17	38	1	7	copy fasta	EIF3I	chr1	32217407	32236604
EIF3I_chr1_32217407_32236604	0/0	t0003	444	24	19	5	0	0	0	copy fasta	EIF3I	chr1	32217407	32236604
EIF3I_chr1_32217407_32236604	0/0	t0004	444	1	0	0	1	0	0	copy fasta	EIF3I	chr1	32217407	32236604
EIF3I_chr1_32217407_32236604	0/0	t0005	444	1	0	0	1	0	0	copy fasta	EIF3I	chr1	32217407	32236604
EIF3J_chr15_44532147_44567803	1/1	t0001	1703	218	46	47	91	8	24	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0002	1703	50	21	1	25	0	3	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0003	1708	10	10	0	0	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0004	1707	5	0	0	5	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0005	1703	1	0	1	0	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0006	1703	1	0	1	0	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0007	1703	1	0	0	1	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0008	1703	1	1	0	0	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0009	1703	1	1	0	0	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0010	1703	1	0	0	1	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0011	1703	1	0	0	0	0	1	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0012	1703	1	0	0	1	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3J_chr15_44532147_44567803	0/0	t0013	1703	1	1	0	0	0	0	copy fasta	EIF3J	chr15	44532147	44567803
EIF3K_chr19_38614188_38641954	1/1	t0001	116	397	86	68	185	14	42	copy fasta	EIF3K	chr19	38614188	38641954
EIF3K_chr19_38614188_38641954	0/0	t0002	116	3	0	0	1	0	2	copy fasta	EIF3K	chr19	38614188	38641954
EIF3L_chr22_37844419_37894407	1/1	t0001	975	172	30	36	73	8	23	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0002	975	136	47	25	44	5	15	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0003	975	4	4	0	0	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0004	975	1	0	0	1	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0005	975	1	0	1	0	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0006	975	1	1	0	0	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0007	965	1	0	0	0	1	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0008	975	1	1	0	0	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3L_chr22_37844419_37894407	0/0	t0009	975	1	1	0	0	0	0	copy fasta	EIF3L	chr22	37844419	37894407
EIF3M_chr11_32578831_32611264	1/0	t0001	3923	96	10	16	52	1	16	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0002	3921	48	9	19	13	2	5	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0003	3921	43	12	12	5	4	10	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/1	t0004	3921	27	4	3	13	0	6	copy fasta	EIF3M	chr11	32578831	32611264