JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF3M_chr11_32578831_32611264	0/0	t0005	3922	16	1	6	5	2	2	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0006	3923	14	0	0	14	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0007	3922	9	3	3	0	1	2	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0008	3921	9	8	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0009	3920	9	9	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0010	3922	6	1	1	3	0	1	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0011	3921	5	0	0	5	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0012	3922	5	5	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0013	3921	4	4	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0014	3923	4	4	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0015	3920	3	0	2	1	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0016	3923	3	0	0	3	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0017	3923	3	3	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0018	3923	3	3	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0019	3920	2	0	1	0	0	1	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0020	3921	2	0	2	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0021	3921	2	2	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0022	3923	2	1	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0023	3920	2	0	2	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0024	3920	2	2	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0025	3922	1	0	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0026	3923	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0027	3922	1	0	0	0	0	1	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0028	3921	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0029	3921	1	0	0	0	0	1	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0030	3921	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0031	3921	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0032	3920	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0033	3922	1	0	0	0	1	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0034	3923	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0035	3922	1	0	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0036	3923	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0037	3923	1	0	0	0	0	1	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0038	3922	1	0	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0039	3922	1	0	0	1	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0040	3921	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0041	3922	1	0	0	0	1	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0042	3921	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0043	3920	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0044	3921	1	0	0	1	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0045	3921	1	1	0	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0046	3921	1	0	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0047	3921	1	0	1	0	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0048	3923	1	0	0	1	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF3M_chr11_32578831_32611264	0/0	t0049	3921	1	0	0	1	0	0	copy fasta	EIF3M	chr11	32578831	32611264
EIF4A1_chr17_7567825_7584006	1/0	t0001	538	298	85	46	120	12	34	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0002	538	69	0	11	57	0	1	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/1	t0003	539	54	9	22	12	5	5	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0004	539	7	0	1	6	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0005	538	1	0	0	1	0	0	copy fasta	EIF4A1	chr17	7567825	7584006