JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF4A1_chr17_7567825_7584006	0/0	t0006	538	1	1	0	0	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0007	539	1	0	0	1	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0008	538	1	1	0	0	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0009	538	1	0	1	0	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0010	538	1	0	0	1	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0011	538	1	0	0	0	1	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A1_chr17_7567825_7584006	0/0	t0012	539	1	0	1	0	0	0	copy fasta	EIF4A1	chr17	7567825	7584006
EIF4A2_chr3_186778577_186794897	1/1	t0001	663	450	96	73	215	18	46	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	t0002	663	2	0	1	1	0	0	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	t0003	663	1	0	0	1	0	0	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	t0004	663	1	0	0	0	0	1	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	t0005	653	1	0	0	0	0	1	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A2_chr3_186778577_186794897	0/0	t0006	663	1	0	0	1	0	0	copy fasta	EIF4A2	chr3	186778577	186794897
EIF4A3_chr17_80129369_80152128	0/0	t0001	1289	44	2	8	28	0	6	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0002	1309	41	11	7	10	4	9	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0003	1309	39	0	2	32	1	4	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0004	1329	37	8	13	12	1	3	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0005	1349	36	8	9	17	1	1	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	1/1	t0006	1289	33	9	0	20	0	2	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0007	1289	32	2	12	10	2	6	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0008	1309	22	9	5	4	3	1	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0009	1269	10	0	3	5	0	2	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0010	1231	10	6	2	0	2	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0011	1369	9	1	1	7	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0012	1311	7	0	0	6	1	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0013	1329	7	0	1	5	1	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0014	1369	5	0	0	5	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0015	1329	5	5	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0016	1350	3	3	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0017	1329	3	0	0	3	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0018	1291	3	1	0	1	0	1	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0019	1291	3	0	0	0	0	3	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0020	1251	3	1	1	0	0	1	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0021	1251	3	3	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0022	1269	3	2	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0023	1389	2	0	0	2	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0024	1313	2	0	1	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0025	1349	2	2	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0026	1349	2	0	0	2	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0027	1329	2	1	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0028	1330	2	2	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0029	1273	2	1	0	0	0	1	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0030	1309	2	2	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0031	1310	2	2	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0032	1289	2	2	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0033	1271	2	0	2	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0034	1329	2	0	0	2	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0035	1231	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0036	1231	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0037	1351	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128