JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF4A3_chr17_80129369_80152128	0/0	t0038	1369	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0039	1331	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0040	1349	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0041	1349	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0042	1349	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0043	1311	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0044	1291	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0045	1349	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0046	1331	1	0	0	0	0	1	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0047	1347	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0048	1329	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0049	1311	1	0	0	0	0	1	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0050	1291	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0051	1329	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0052	1310	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0053	1291	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0054	1289	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0055	1271	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0056	1309	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0057	1289	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0058	1290	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0059	1289	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0060	1271	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0061	1271	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0062	1269	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0063	1251	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0064	1233	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0065	1233	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0066	1269	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0067	1213	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0068	1193	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0069	1391	1	0	1	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0070	1289	1	0	0	1	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0071	1329	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4A3_chr17_80129369_80152128	0/0	t0072	1309	1	1	0	0	0	0	copy fasta	EIF4A3	chr17	80129369	80152128
EIF4B_chr12_53001456_53047215	0/1	t0001	2024	141	4	45	59	7	25	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0002	2025	100	28	16	47	1	8	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0003	2024	34	1	1	32	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0004	2024	27	18	3	4	0	2	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	1/0	t0005	2021	19	17	1	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0006	2027	7	2	1	0	1	3	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0007	2021	6	6	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0008	2025	5	0	0	4	0	1	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0009	2021	3	3	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0010	2021	3	0	1	2	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0011	2024	3	3	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0012	2024	3	0	0	3	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0013	2021	3	3	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0014	2024	2	0	1	0	1	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0015	2024	2	2	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215