JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF4B_chr12_53001456_53047215	0/0	t0016	2024	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0017	2024	1	0	1	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0018	2024	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0019	2024	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0020	2021	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0021	2024	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0022	2024	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0023	2024	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0024	2025	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0025	2025	1	0	0	1	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0026	2025	1	0	0	1	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0027	2025	1	1	0	0	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0028	2025	1	0	0	0	0	1	copy fasta	EIF4B	chr12	53001456	53047215
EIF4B_chr12_53001456_53047215	0/0	t0029	2025	1	0	0	1	0	0	copy fasta	EIF4B	chr12	53001456	53047215
EIF4E1B_chr5_176625675_176651644	0/0	t0001	1256	318	69	36	176	10	27	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/1	t0002	1256	89	16	38	16	6	12	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	1/0	t0003	1256	9	8	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	t0004	1256	2	0	1	0	0	1	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	t0005	1256	1	0	1	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	t0006	1256	1	1	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	t0007	1256	1	1	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E1B_chr5_176625675_176651644	0/0	t0008	1256	1	1	0	0	0	0	copy fasta	EIF4E1B	chr5	176625675	176651644
EIF4E2_chr2_232545689_232574210	1/1	t0001	230	422	94	72	196	16	42	copy fasta	EIF4E2	chr2	232545689	232574210
EIF4E3_chr3_71670414_71730402	0/1	t0001	9304	122	30	37	30	6	18	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0002	9305	60	3	5	46	2	4	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0003	9305	53	22	3	26	0	2	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0004	9305	30	0	14	16	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0005	9305	13	3	0	4	1	5	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0006	9305	8	6	2	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0007	9306	6	0	0	6	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0008	9304	5	5	0	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0009	9303	5	1	0	2	0	2	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0010	9304	3	0	2	0	1	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0011	9305	3	0	0	3	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0012	9305	3	0	3	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0013	9306	3	0	0	3	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0014	9304	2	2	0	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0015	9304	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0016	9304	2	2	0	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0017	9305	2	0	1	0	0	1	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0018	9305	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0019	9305	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0020	9305	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0021	9305	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0022	9305	2	0	2	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0023	9305	2	2	0	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0024	9305	2	0	0	0	0	2	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0025	9306	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0026	9305	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0027	9306	2	0	0	2	0	0	copy fasta	EIF4E3	chr3	71670414	71730402