JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF4E3_chr3_71670414_71730402	0/0	t0078	9305	1	0	0	1	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0079	9305	1	0	0	1	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0080	9305	1	0	0	0	0	1	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0081	9305	1	0	0	0	0	1	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0082	9306	1	1	0	0	0	0	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4E3_chr3_71670414_71730402	0/0	t0083	9306	1	0	0	0	0	1	copy fasta	EIF4E3	chr3	71670414	71730402
EIF4EBP1_chr8_38025534_38065365	1/1	t0001	471	290	80	49	112	10	37	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	t0002	471	45	1	9	33	0	2	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	t0003	471	6	6	0	0	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	t0004	471	1	1	0	0	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	t0005	493	1	0	0	1	0	0	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP1_chr8_38025534_38065365	0/0	t0006	471	1	0	0	0	0	1	copy fasta	EIF4EBP1	chr8	38025534	38065365
EIF4EBP2_chr10_70399145_70433618	0/1	t0001	7129	105	1	26	67	3	7	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0002	7129	66	2	12	42	0	10	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0003	7129	38	14	9	11	0	4	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0004	7129	32	10	3	11	0	8	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0005	7129	22	0	0	22	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0006	7129	20	6	4	2	2	6	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0007	7128	10	0	3	3	3	1	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	1/0	t0008	7129	10	9	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0009	7128	8	0	2	3	0	3	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0010	7129	6	5	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0011	7129	5	0	5	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0012	7128	5	5	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0013	7129	5	5	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0014	7128	4	1	0	3	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0015	7129	4	3	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0016	7129	4	2	2	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0017	7129	4	0	0	4	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0018	7133	4	4	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0019	7129	3	0	0	3	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0020	7129	3	3	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0021	7128	3	1	1	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0022	7130	3	0	3	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0023	7121	3	0	0	3	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0024	7130	3	2	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0025	7129	3	3	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0026	7129	3	1	1	0	0	1	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0027	7129	2	2	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0028	7128	2	0	0	0	2	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0029	7128	2	2	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0030	7128	2	0	0	2	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0031	7130	2	2	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0032	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0033	7129	1	0	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0034	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0035	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0036	7129	1	1	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0037	7128	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0038	7129	1	0	0	0	1	0	copy fasta	EIF4EBP2	chr10	70399145	70433618