JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF4EBP2_chr10_70399145_70433618	0/0	t0039	7129	1	0	0	0	0	1	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0040	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0041	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0042	7128	1	0	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0043	7129	1	1	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0044	7130	1	0	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0045	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0046	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0047	7129	1	0	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0048	7130	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0049	7128	1	0	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0050	7129	1	1	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0051	7130	1	0	0	0	0	1	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0052	7128	1	0	0	0	0	1	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0053	7128	1	0	0	0	1	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0054	7130	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0055	7129	1	1	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0056	7129	1	1	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0057	7128	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0058	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0059	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0060	7129	1	0	1	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0061	7129	1	0	0	0	0	1	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0062	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0063	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0064	7129	1	1	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0065	7130	1	1	0	0	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0066	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP2_chr10_70399145_70433618	0/0	t0067	7129	1	0	0	1	0	0	copy fasta	EIF4EBP2	chr10	70399145	70433618
EIF4EBP3_chr5_140542662_140554576	1/1	t0001	391	394	94	72	174	18	34	copy fasta	EIF4EBP3	chr5	140542662	140554576
EIF4ENIF1_chr22_31434367_31494842	1/1	t0001	690	342	76	65	150	11	38	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	t0002	690	18	3	3	12	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	t0003	690	3	0	1	0	2	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	t0004	690	1	1	0	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	t0005	690	1	0	0	0	1	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4ENIF1_chr22_31434367_31494842	0/0	t0006	690	1	0	1	0	0	0	copy fasta	EIF4ENIF1	chr22	31434367	31494842
EIF4E_chr4_98874276_98934133	1/1	t0001	1774	205	78	45	59	3	18	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	t0002	1774	60	1	3	51	0	5	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	t0003	1775	14	3	6	0	1	4	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	t0004	1774	8	8	0	0	0	0	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	t0005	1775	6	1	2	3	0	0	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	t0006	1774	3	0	0	3	0	0	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	t0007	1774	3	1	0	0	0	2	copy fasta	EIF4E	chr4	98874276	98934133
EIF4E_chr4_98874276_98934133	0/0	t0008	1774	1	0	0	0	0	1	copy fasta	EIF4E	chr4	98874276	98934133
EIF4G1_chr3_184309606_184340353	1/1	t0001	606	374	87	60	168	17	40	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	t0002	606	3	3	0	0	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	t0003	606	2	0	0	2	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	t0004	606	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	t0005	606	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	t0006	606	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353