JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF4G1_chr3_184309606_184340353	0/0	t0007	606	1	0	0	0	1	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G1_chr3_184309606_184340353	0/0	t0008	606	1	0	0	1	0	0	copy fasta	EIF4G1	chr3	184309606	184340353
EIF4G2_chr11_10792054_10813926	1/1	t0001	1071	402	83	68	189	14	46	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	t0002	1071	3	0	0	3	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	t0003	1071	2	2	0	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	t0004	1071	1	0	0	0	0	1	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	t0005	1071	1	0	0	1	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	t0006	1071	1	0	0	0	0	1	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	t0007	1071	1	0	0	1	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G2_chr11_10792054_10813926	0/0	t0008	1071	1	1	0	0	0	0	copy fasta	EIF4G2	chr11	10792054	10813926
EIF4G3_chr1_20801479_21181897	1/0	t0001	1472	125	43	24	36	6	15	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0002	1469	59	18	20	10	5	6	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0003	1475	40	3	3	25	2	7	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0004	1471	18	0	2	13	0	3	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/1	t0005	1478	16	3	2	4	1	5	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0006	1473	11	0	0	11	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0007	1470	9	8	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0008	1472	4	3	0	1	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0009	1473	3	3	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0010	1471	3	0	0	2	0	1	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0011	1474	3	0	0	3	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0012	1481	3	1	0	2	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0013	1457	2	0	0	2	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0014	1473	2	2	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0015	1487	2	0	0	0	2	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0016	1460	1	0	0	1	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0017	1470	1	0	0	1	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0018	1469	1	0	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0019	1469	1	0	1	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0020	1472	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0021	1475	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0022	1484	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0023	1483	1	0	0	1	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0024	1469	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0025	1473	1	0	0	0	0	1	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0026	1475	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4G3_chr1_20801479_21181897	0/0	t0027	1478	1	1	0	0	0	0	copy fasta	EIF4G3	chr1	20801479	21181897
EIF4H_chr7_74169356_74202096	1/1	t0001	1817	347	78	59	160	10	38	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0002	1817	6	5	1	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0003	1817	3	3	0	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0004	1817	3	1	2	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0005	1818	3	0	0	3	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0006	1817	2	0	0	2	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0007	1817	1	0	1	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0008	1817	1	0	1	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0009	1817	1	1	0	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0010	1817	1	0	0	0	0	1	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0011	1817	1	0	0	0	0	1	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0012	1817	1	1	0	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0013	1818	1	0	0	1	0	0	copy fasta	EIF4H	chr7	74169356	74202096