JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF4H_chr7_74169356_74202096	0/0	t0014	1817	1	1	0	0	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0015	1817	1	0	0	1	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF4H_chr7_74169356_74202096	0/0	t0016	1817	1	0	0	1	0	0	copy fasta	EIF4H	chr7	74169356	74202096
EIF5A2_chr3_170883418_170913637	0/0	t0001	5077	72	12	22	22	4	12	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0002	5067	59	1	9	45	1	3	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0003	5080	28	20	3	0	2	3	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0004	5074	23	0	0	21	0	2	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0005	5081	22	0	0	21	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0006	5078	22	0	8	12	1	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0007	5081	14	8	5	0	1	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0008	5068	14	7	6	0	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0009	5066	12	3	2	6	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0010	5080	8	0	2	1	1	4	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0011	5078	6	6	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0012	5077	6	0	0	6	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0013	5075	6	0	1	4	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	1/0	t0014	5073	5	0	1	3	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0015	5073	4	0	2	2	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0016	5077	4	0	0	0	0	4	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0017	5079	4	4	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0018	5078	4	0	0	4	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0019	5078	4	0	0	1	0	3	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0020	5100	3	0	3	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0021	5077	3	3	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0022	5078	3	3	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0023	5080	3	2	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0024	5080	3	3	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0025	5067	3	3	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0026	5066	3	0	1	1	1	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/1	t0027	5077	3	0	2	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0028	5078	3	0	0	3	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0029	5066	2	0	0	2	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0030	5079	2	1	0	0	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0031	5067	2	0	0	2	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0032	5082	2	0	2	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0033	5068	2	0	0	1	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0034	5080	2	0	0	2	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0035	5077	2	0	0	0	1	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0036	5079	2	1	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0037	5088	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0038	5071	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0039	5079	1	0	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0040	5079	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0041	5079	1	0	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0042	5073	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0043	5079	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0044	5073	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0045	5081	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0046	5081	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0047	5084	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637