JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF5A2_chr3_170883418_170913637	0/0	t0048	5083	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0049	5081	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0050	5078	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0051	5081	1	0	0	0	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0052	5082	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0053	5079	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0054	5071	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0055	5067	1	0	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0056	5078	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0057	5067	1	0	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0058	5068	1	0	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0059	5077	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0060	5072	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0061	5078	1	0	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0062	5077	1	0	1	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0063	5079	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0064	5077	1	1	0	0	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0065	5077	1	0	0	0	1	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0066	5073	1	0	0	0	1	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0067	5078	1	0	0	0	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0068	5080	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0069	5079	1	0	0	1	0	0	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5A2_chr3_170883418_170913637	0/0	t0070	5078	1	0	0	0	0	1	copy fasta	EIF5A2	chr3	170883418	170913637
EIF5AL1_chr10_79507533_79521440	1/1	t0001	3444	175	28	37	79	14	15	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0002	3441	73	12	7	41	1	12	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0003	3453	33	3	4	25	1	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0004	3454	19	0	0	19	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0005	3445	18	0	6	7	0	5	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0006	3453	7	7	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0007	3444	7	7	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0008	3456	5	0	0	4	1	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0009	3443	5	4	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0010	3445	4	0	4	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0011	3441	4	0	4	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0012	3450	3	3	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0013	3453	3	0	0	3	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0014	3452	3	1	0	1	0	1	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0015	3445	3	1	2	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0016	3444	3	3	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0017	3443	3	3	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0018	3442	3	2	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0019	3441	3	0	0	1	1	1	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0020	3430	3	3	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0021	3445	2	0	2	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0022	3443	2	2	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0023	3443	2	0	0	2	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0024	3443	2	2	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0025	3441	2	0	0	2	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0026	3443	2	0	0	2	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0027	3440	2	0	1	0	0	1	copy fasta	EIF5AL1	chr10	79507533	79521440