JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF5AL1_chr10_79507533_79521440	0/0	t0028	3439	2	1	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0029	3440	2	2	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0030	3438	2	2	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0031	3444	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0032	3459	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0033	3458	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0034	3455	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0035	3453	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0036	3453	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0037	3443	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0038	3444	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0039	3445	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0040	3444	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0041	3443	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0042	3444	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0043	3443	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0044	3442	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0045	3441	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0046	3469	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0047	3444	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0048	3444	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0049	3444	1	0	0	0	0	1	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0050	3444	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0051	3444	1	0	0	0	0	1	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0052	3444	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0053	3444	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0054	3442	1	0	0	0	0	1	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0055	3442	1	0	0	0	0	1	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0056	3444	1	0	0	0	0	1	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0057	3441	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0058	3443	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0059	3442	1	1	0	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0060	3439	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0061	3439	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0062	3437	1	0	0	1	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5AL1_chr10_79507533_79521440	0/0	t0063	3444	1	0	1	0	0	0	copy fasta	EIF5AL1	chr10	79507533	79521440
EIF5A_chr17_7302628_7317463	0/0	t0001	806	79	21	11	42	0	5	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	1/1	t0002	800	72	37	12	6	9	6	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0003	805	64	10	7	39	2	6	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0004	802	57	6	7	40	0	4	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0005	807	52	0	19	17	3	13	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0006	807	40	7	5	25	1	2	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0007	804	18	1	9	5	0	3	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0008	801	9	6	1	2	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0009	808	7	0	3	2	1	1	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0010	799	6	2	1	3	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0011	806	4	0	1	2	0	1	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0012	804	3	0	0	3	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0013	806	2	0	2	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0014	800	2	1	0	1	0	0	copy fasta	EIF5A	chr17	7302628	7317463