JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF5A_chr17_7302628_7317463	0/0	t0015	784	1	0	0	1	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0016	803	1	0	0	1	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0017	800	1	0	0	0	0	1	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0018	807	1	0	1	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0019	805	1	0	0	1	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0020	801	1	1	0	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0021	806	1	0	1	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0022	807	1	1	0	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5A_chr17_7302628_7317463	0/0	t0023	801	1	1	0	0	0	0	copy fasta	EIF5A	chr17	7302628	7317463
EIF5B_chr2_99332389_99406326	0/0	t0001	2079	95	12	34	34	5	10	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	1/1	t0002	2079	84	19	15	38	1	9	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0003	2075	47	6	17	22	1	1	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0004	2079	38	16	2	9	3	8	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0005	2079	32	1	5	24	0	2	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0006	2083	7	7	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0007	2075	6	0	0	6	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0008	2079	5	0	0	5	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0009	2063	5	5	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0010	2063	4	4	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0011	2079	3	3	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0012	2095	2	0	0	0	0	2	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0013	2027	2	2	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0014	2083	2	2	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0015	2079	1	0	0	0	0	1	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0016	2075	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0017	2079	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0018	2079	1	0	0	1	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0019	2079	1	0	0	0	0	1	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0020	2079	1	0	0	1	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0021	2079	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0022	2083	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0023	2079	1	0	1	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5B_chr2_99332389_99406326	0/0	t0024	2079	1	1	0	0	0	0	copy fasta	EIF5B	chr2	99332389	99406326
EIF5_chr14_103329237_103350025	0/1	t0001	4421	124	16	26	59	5	17	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0002	4415	77	21	19	20	7	10	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0003	4419	72	7	7	46	2	10	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0004	4415	45	0	3	40	0	2	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0005	4424	11	0	0	11	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0006	4419	9	8	1	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	1/0	t0007	4415	8	5	2	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0008	4415	7	0	0	7	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0009	4416	6	6	0	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0010	4421	5	0	0	5	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0011	4422	5	0	1	0	0	4	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0012	4417	4	1	1	2	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0013	4414	4	2	2	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0014	4417	3	3	0	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0015	4420	3	3	0	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0016	4419	3	1	2	0	0	0	copy fasta	EIF5	chr14	103329237	103350025
EIF5_chr14_103329237_103350025	0/0	t0017	4421	2	0	2	0	0	0	copy fasta	EIF5	chr14	103329237	103350025