JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIPR1_chr2_3183970_3382818	1/0	t0002	494	58	11	6	28	5	7	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/1	t0003	494	55	5	18	18	5	8	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	t0004	494	11	10	0	1	0	0	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	t0005	494	3	3	0	0	0	0	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	t0006	494	3	3	0	0	0	0	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	t0007	494	2	0	1	0	0	1	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	t0008	494	1	0	1	0	0	0	copy fasta	EIPR1	chr2	3183970	3382818
EIPR1_chr2_3183970_3382818	0/0	t0009	494	1	0	0	0	0	1	copy fasta	EIPR1	chr2	3183970	3382818
ELAC1_chr18_50963040_50993121	1/1	t0001	1120	200	55	39	73	7	24	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0002	1120	165	29	30	94	5	7	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0003	1120	6	6	0	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0004	1120	3	3	0	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0005	1120	2	0	0	2	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0006	1120	2	1	0	0	0	1	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0007	1120	2	0	0	0	0	2	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0008	1120	1	0	0	1	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0009	1120	1	0	1	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0010	1120	1	1	0	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC1_chr18_50963040_50993121	0/0	t0011	1120	1	1	0	0	0	0	copy fasta	ELAC1	chr18	50963040	50993121
ELAC2_chr17_12986612_13023027	0/0	t0001	1280	141	23	30	58	12	18	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	1/0	t0002	1287	49	15	11	19	0	3	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0003	1287	40	0	1	38	1	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0004	1279	30	0	0	29	0	1	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0005	1284	21	1	7	4	1	8	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0006	1286	20	12	4	0	2	2	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0007	1267	12	1	6	0	2	3	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0008	1291	8	7	1	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0009	1291	7	5	1	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0010	1284	7	0	0	7	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0011	1284	7	0	0	1	0	6	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0012	1280	5	5	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0013	1272	5	0	5	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0014	1280	4	4	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0015	1284	4	2	0	2	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0016	1284	3	3	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0017	1277	3	3	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0018	1276	2	2	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0019	1276	2	0	0	0	0	2	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0020	1283	2	0	0	1	0	1	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0021	1280	2	2	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0022	1280	2	2	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0023	1276	2	1	1	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0024	1284	2	0	1	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0025	1284	2	0	2	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0026	1287	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0027	1283	1	0	0	0	0	1	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0028	1267	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0029	1287	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0030	1284	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0031	1288	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027