JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELAC2_chr17_12986612_13023027	0/0	t0032	1287	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0033	1284	1	0	1	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0034	1280	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0035	1280	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/1	t0036	1280	1	0	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0037	1284	1	0	0	0	0	1	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0038	1277	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0039	1281	1	1	0	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0040	1280	1	0	1	0	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0041	1291	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0042	1291	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELAC2_chr17_12986612_13023027	0/0	t0043	1291	1	0	0	1	0	0	copy fasta	ELAC2	chr17	12986612	13023027
ELANE_chr19_847303_861243	0/1	t0001	106	402	89	72	184	14	42	copy fasta	ELANE	chr19	847303	861243
ELANE_chr19_847303_861243	0/0	t0002	106	1	1	0	0	0	0	copy fasta	ELANE	chr19	847303	861243
ELAPOR1_chr1_109109115_109211781	0/0	t0001	3837	39	17	3	8	1	10	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/1	t0002	3836	36	4	15	8	3	5	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0003	3836	35	5	13	13	1	3	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0004	3838	22	10	8	0	4	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0005	3835	18	0	1	17	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0006	3837	9	8	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	1/0	t0007	3839	7	6	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0008	3837	5	2	1	0	2	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0009	3839	5	0	1	4	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0010	3837	4	0	1	1	2	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0011	3836	4	4	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0012	3837	3	3	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0013	3837	3	3	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0014	3836	3	1	1	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0015	3837	2	0	2	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0016	3838	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0017	3838	2	1	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0018	3838	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0019	3837	2	0	0	0	1	1	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0020	3837	2	1	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0021	3837	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0022	3838	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0023	3836	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0024	3836	2	2	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0025	3838	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0026	3837	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0027	3838	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0028	3838	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0029	3838	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0030	3838	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0031	3837	1	0	1	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0032	3837	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0033	3837	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0034	3836	1	0	0	0	0	1	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0035	3836	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0036	3836	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781