JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELAPOR1_chr1_109109115_109211781	0/0	t0037	3836	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0038	3835	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0039	3836	1	1	0	0	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0040	3840	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR1_chr1_109109115_109211781	0/0	t0041	3839	1	0	0	1	0	0	copy fasta	ELAPOR1	chr1	109109115	109211781
ELAPOR2_chr7_86871906_87064654	1/0	t0001	3707	152	50	27	62	7	5	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0002	3707	10	9	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0003	3707	9	9	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0004	3707	8	4	3	0	0	1	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/1	t0005	3707	3	0	2	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0006	3707	2	0	0	2	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0007	3707	2	0	1	0	1	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0008	3707	2	2	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0009	3707	1	0	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0010	3707	1	1	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0011	3707	1	0	1	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0012	3707	1	1	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0013	3707	1	0	0	1	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0014	3707	1	0	0	1	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0015	3707	1	1	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAPOR2_chr7_86871906_87064654	0/0	t0016	3707	1	1	0	0	0	0	copy fasta	ELAPOR2	chr7	86871906	87064654
ELAVL1_chr19_7953573_8010641	1/0	t0001	5074	108	39	18	25	7	18	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/1	t0002	5073	32	2	6	14	2	7	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0003	5046	21	1	11	8	0	1	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0004	5074	19	2	10	0	4	3	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0005	5046	15	0	3	10	2	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0006	5074	11	10	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0007	5073	8	0	2	6	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0008	5074	7	0	0	7	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0009	5074	5	5	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0010	5073	5	0	0	5	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0011	5046	4	4	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0012	5073	3	1	0	2	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0013	5074	3	3	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0014	5074	3	3	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0015	5158	3	3	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0016	5074	2	2	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0017	5074	2	2	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0018	5102	2	1	0	0	1	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0019	5074	2	0	0	2	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0020	5073	1	0	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0021	5073	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0022	5074	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0023	5074	1	0	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0024	5074	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0025	5073	1	1	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0026	5046	1	0	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0027	5046	1	1	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0028	5046	1	0	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0029	5046	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641