JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELAVL1_chr19_7953573_8010641	0/0	t0030	5074	1	0	0	0	0	1	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0031	5046	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0032	5074	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0033	5074	1	0	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0034	5073	1	1	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0035	5074	1	0	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0036	5102	1	1	0	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0037	5130	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0038	5074	1	0	1	0	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0039	5097	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL1_chr19_7953573_8010641	0/0	t0040	5073	1	0	0	1	0	0	copy fasta	ELAVL1	chr19	7953573	8010641
ELAVL2_chr9_23685104_23831240	0/0	t0001	2904	232	40	47	111	11	23	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0002	2904	37	6	6	20	0	5	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0003	2904	32	1	7	10	1	13	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	1/0	t0004	2904	13	7	4	0	0	1	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0005	2904	7	0	0	7	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0006	2904	6	6	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0007	2903	3	0	0	3	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0008	2904	3	3	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0009	2904	2	2	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0010	2904	2	2	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0011	2904	2	2	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0012	2903	2	0	0	2	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0013	2904	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0014	2904	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0015	2904	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0016	2904	1	0	0	1	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0017	2904	1	0	0	0	0	1	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0018	2904	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/1	t0019	2904	1	0	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0020	2904	1	0	0	1	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0021	2904	1	1	0	0	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0022	2904	1	0	0	1	0	0	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL2_chr9_23685104_23831240	0/0	t0023	2904	1	0	0	0	0	1	copy fasta	ELAVL2	chr9	23685104	23831240
ELAVL3_chr19_11446326_11486046	1/1	t0001	3639	111	21	25	45	7	11	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0002	3640	32	9	7	10	0	6	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0003	3639	14	13	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0004	3638	11	0	4	0	3	4	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0005	3640	10	3	4	3	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0006	3640	10	3	1	6	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0007	3639	9	0	6	1	1	1	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0008	3638	8	1	3	1	0	3	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0009	3641	8	1	2	1	0	4	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0010	3640	5	0	0	5	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0011	3639	5	1	2	1	1	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0012	3639	4	0	0	4	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0013	3639	3	3	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0014	3640	3	1	1	0	0	1	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0015	3638	3	3	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0016	3639	3	1	1	0	0	1	copy fasta	ELAVL3	chr19	11446326	11486046