JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELAVL3_chr19_11446326_11486046	0/0	t0017	3643	3	3	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0018	3639	2	2	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0019	3639	2	0	1	0	1	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0020	3638	2	0	0	0	0	2	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0021	3641	2	2	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0022	3640	2	2	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0023	3639	2	2	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0024	3639	2	0	0	2	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0025	3637	2	2	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0026	3638	2	1	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0027	3640	2	0	2	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0028	3639	2	0	0	0	0	2	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0029	3639	2	0	0	2	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0030	3640	2	0	0	2	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0031	3641	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0032	3640	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0033	3638	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0034	3640	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0035	3639	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0036	3638	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0037	3640	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0038	3639	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0039	3641	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0040	3639	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0041	3639	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0042	3639	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0043	3639	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0044	3637	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0045	3642	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0046	3640	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0047	3639	1	0	0	0	1	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0048	3641	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0049	3641	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0050	3639	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0051	3638	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0052	3639	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0053	3639	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0054	3639	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0055	3650	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0056	3637	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0057	3643	1	0	0	0	0	1	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0058	3641	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0059	3642	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0060	3642	1	0	0	0	0	1	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0061	3640	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0062	3640	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0063	3640	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0064	3639	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0065	3639	1	0	0	0	0	1	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0066	3639	1	0	0	0	0	1	copy fasta	ELAVL3	chr19	11446326	11486046