JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELAVL3_chr19_11446326_11486046	0/0	t0067	3639	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0068	3638	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0069	3639	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0070	3640	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0071	3639	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0072	3640	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0073	3642	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0074	3641	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0075	3639	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0076	3638	1	0	0	1	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0077	3640	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0078	3640	1	0	1	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0079	3640	1	0	0	0	0	1	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL3_chr19_11446326_11486046	0/0	t0080	3640	1	1	0	0	0	0	copy fasta	ELAVL3	chr19	11446326	11486046
ELAVL4_chr1_50103920_50208772	1/1	t0001	2865	187	57	37	63	10	18	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0002	2865	48	2	1	38	2	5	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0003	2864	16	13	3	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0004	2865	8	7	1	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0005	2865	4	4	0	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0006	2865	3	0	3	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0007	2865	3	3	0	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0008	2865	1	1	0	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0009	2865	1	1	0	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0010	2865	1	1	0	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0011	2865	1	0	0	0	0	1	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0012	2865	1	0	0	1	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0013	2864	1	1	0	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELAVL4_chr1_50103920_50208772	0/0	t0014	2865	1	0	1	0	0	0	copy fasta	ELAVL4	chr1	50103920	50208772
ELF1_chr13_40926924_41024316	1/1	t0001	1819	227	46	18	141	6	14	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0002	1819	97	6	34	38	6	13	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0003	1819	11	0	0	9	0	2	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0004	1819	9	7	2	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0005	1819	4	4	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0006	1814	3	3	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0007	1819	2	0	0	0	0	2	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0008	1819	2	2	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0009	1819	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0010	1819	1	0	0	1	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0011	1819	1	0	0	1	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0012	1819	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0013	1819	1	0	0	0	0	1	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0014	1819	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF1_chr13_40926924_41024316	0/0	t0015	1819	1	1	0	0	0	0	copy fasta	ELF1	chr13	40926924	41024316
ELF2_chr4_139052265_139182218	0/0	t0001	2220	203	46	42	86	7	22	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	1/1	t0002	2222	117	31	11	58	5	10	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0003	2224	10	7	2	0	0	1	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0004	2222	3	0	0	3	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0005	2222	2	0	2	0	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0006	2220	1	0	0	1	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0007	2220	1	0	0	1	0	0	copy fasta	ELF2	chr4	139052265	139182218