JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELF2_chr4_139052265_139182218	0/0	t0008	2220	1	0	0	1	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0009	2220	1	0	0	0	0	1	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0010	2220	1	0	1	0	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0011	2222	1	0	0	1	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF2_chr4_139052265_139182218	0/0	t0012	2220	1	0	0	1	0	0	copy fasta	ELF2	chr4	139052265	139182218
ELF3_chr1_202005587_202022183	0/0	t0001	1988	202	34	55	83	7	23	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/1	t0002	1988	174	16	17	121	4	15	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0003	1988	23	17	2	0	3	1	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	1/0	t0004	1989	15	0	5	1	3	5	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0005	1989	14	12	0	0	1	1	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0006	1989	10	10	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0007	1988	4	4	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0008	1989	3	1	0	2	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0009	1989	2	2	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0010	1988	2	2	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0011	1989	1	0	0	1	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0012	1988	1	0	0	1	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0013	1988	1	0	1	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0014	1988	1	0	1	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0015	1990	1	1	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0016	1988	1	1	0	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0017	1988	1	0	0	0	0	1	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0018	1988	1	0	0	1	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF3_chr1_202005587_202022183	0/0	t0019	1988	1	0	1	0	0	0	copy fasta	ELF3	chr1	202005587	202022183
ELF4_chrX_130058955_130115497	0/0	t0001	3146	80	17	16	43	2	2	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0002	3149	28	0	4	16	0	8	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	1/1	t0003	3149	24	4	5	10	2	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0004	3155	20	2	12	0	2	4	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0005	3143	16	16	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0006	3152	13	2	4	5	0	2	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0007	3152	12	0	0	4	0	8	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0008	3146	10	0	0	10	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0009	3137	7	0	2	5	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0010	3152	7	3	2	2	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0011	3155	5	3	2	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0012	3155	3	0	2	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0013	3159	3	0	0	3	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0014	3162	3	0	0	3	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0015	3152	3	2	0	0	1	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0016	3143	2	0	0	2	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0017	3146	2	2	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0018	3143	2	2	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0019	3146	2	2	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0020	3149	2	0	0	2	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0021	3146	2	2	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0022	3149	2	2	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0023	3150	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0024	3148	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0025	3143	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0026	3143	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497