JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELF4_chrX_130058955_130115497	0/0	t0027	3146	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0028	3146	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0029	3146	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0030	3152	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0031	3155	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0032	3143	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0033	3149	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0034	3143	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0035	3149	1	0	0	0	0	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0036	3152	1	0	0	0	0	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0037	3159	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0038	3140	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0039	3146	1	0	0	0	0	1	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0040	3155	1	0	0	0	1	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0041	3155	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0042	3145	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0043	3146	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0044	3146	1	1	0	0	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0045	3146	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0046	3172	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0047	3146	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF4_chrX_130058955_130115497	0/0	t0048	3161	1	0	0	1	0	0	copy fasta	ELF4	chrX	130058955	130115497
ELF5_chr11_34473791_34518794	0/0	t0001	1551	150	7	30	94	7	12	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0002	1550	73	12	4	55	2	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	1/0	t0003	1550	64	12	12	32	2	5	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/1	t0004	1550	50	1	20	9	5	14	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0005	1550	45	41	4	0	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0006	1552	15	0	5	10	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0007	1551	8	8	0	0	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0008	1551	7	0	0	7	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0009	1550	6	3	0	3	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0010	1550	5	5	0	0	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0011	1550	2	2	0	0	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0012	1551	2	2	0	0	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0013	1551	2	0	0	0	0	2	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0014	1550	1	0	0	1	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0015	1550	1	0	0	1	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0016	1550	1	0	1	0	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0017	1551	1	1	0	0	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0018	1552	1	0	0	0	0	1	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0019	1550	1	0	0	1	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELF5_chr11_34473791_34518794	0/0	t0020	1551	1	0	0	1	0	0	copy fasta	ELF5	chr11	34473791	34518794
ELFN1_chr7_1665277_1752946	0/0	t0001	1493	85	19	21	27	6	12	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	1/0	t0002	1490	25	1	7	10	2	4	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/1	t0003	1495	21	7	1	6	2	4	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0004	1493	19	0	3	11	0	5	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0005	1496	15	10	1	4	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0006	1493	9	8	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0007	1497	6	0	1	4	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0008	1498	5	5	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946