JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELFN1_chr7_1665277_1752946	0/0	t0009	1498	5	1	3	0	1	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0010	1497	5	5	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0011	1494	5	0	0	4	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0012	1486	5	1	4	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0013	1493	5	0	0	5	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0014	1490	4	0	3	0	1	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0015	1498	4	0	0	1	0	3	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0016	1497	4	4	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0017	1493	4	0	4	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0018	1489	4	1	0	2	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0019	1499	3	0	1	0	1	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0020	1495	3	3	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0021	1494	3	0	1	2	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0022	1494	3	1	2	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0023	1490	3	0	0	3	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0024	1489	3	3	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0025	1500	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0026	1499	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0027	1497	2	0	0	1	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0028	1497	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0029	1496	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0030	1494	2	1	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0031	1494	2	0	0	1	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0032	1492	2	1	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0033	1489	2	0	0	2	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0034	1490	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0035	1493	2	2	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0036	1490	2	0	0	2	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0037	1492	2	0	0	2	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0038	1499	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0039	1489	1	0	0	0	1	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0040	1501	1	0	0	0	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0041	1500	1	0	0	0	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0042	1501	1	0	0	0	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0043	1499	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0044	1496	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0045	1495	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0046	1495	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0047	1494	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0048	1504	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0049	1499	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0050	1498	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0051	1497	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0052	1495	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0053	1493	1	0	0	0	0	1	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0054	1494	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0055	1493	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0056	1492	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0057	1491	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0058	1490	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946