JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELFN1_chr7_1665277_1752946	0/0	t0059	1493	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0060	1492	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0061	1491	1	0	0	1	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0062	1494	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0063	1493	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0064	1497	1	0	1	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN1_chr7_1665277_1752946	0/0	t0065	1496	1	1	0	0	0	0	copy fasta	ELFN1	chr7	1665277	1752946
ELFN2_chr22_37362960_37432479	1/0	t0001	5908	49	8	7	26	2	5	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0002	5910	35	0	4	29	1	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0003	5907	28	2	15	1	3	7	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0004	5910	27	3	3	12	3	6	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0005	5907	16	16	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/1	t0006	5910	14	0	6	4	0	3	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0007	5907	11	0	1	7	0	3	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0008	5907	9	2	1	6	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0009	5907	7	6	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0010	5911	6	0	3	0	3	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0011	5910	5	5	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0012	5908	5	0	1	0	1	3	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0013	5910	3	0	0	3	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0014	5907	3	0	0	3	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0015	5913	3	3	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0016	5909	3	3	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0017	5903	3	2	0	0	1	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0018	5910	3	1	2	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0019	5910	3	0	0	3	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0020	5908	3	0	0	3	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0021	5907	3	3	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0022	5903	3	3	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0023	5910	2	0	0	2	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0024	5916	2	0	0	2	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0025	5912	2	1	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0026	5913	2	0	0	2	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0027	5909	2	2	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0028	5910	2	0	0	2	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0029	5910	2	0	0	2	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0030	5906	2	2	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0031	5910	2	0	2	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0032	5910	2	0	0	2	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0033	5910	2	0	0	1	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0034	5908	2	0	0	0	0	2	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0035	5908	2	1	0	0	1	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0036	5907	2	2	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0037	5907	2	0	2	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0038	5911	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0039	5907	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0040	5907	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0041	5918	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0042	5915	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0043	5915	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479