JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELFN2_chr22_37362960_37432479	0/0	t0044	5916	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0045	5912	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0046	5913	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0047	5913	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0048	5913	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0049	5911	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0050	5909	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0051	5910	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0052	5910	1	0	0	0	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0053	5907	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0054	5908	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0055	5907	1	0	0	0	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0056	5907	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0057	5907	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0058	5907	1	0	0	0	1	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0059	5903	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0060	5903	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0061	5903	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0062	5904	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0063	5900	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0064	5901	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0065	5901	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0066	5916	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0067	5916	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0068	5916	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0069	5916	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0070	5914	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0071	5911	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0072	5911	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0073	5911	1	0	0	0	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0074	5909	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0075	5910	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0076	5910	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0077	5910	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0078	5910	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0079	5910	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0080	5910	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0081	5908	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0082	5907	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0083	5907	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0084	5908	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0085	5908	1	0	0	0	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0086	5908	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0087	5908	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0088	5906	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0089	5907	1	0	0	0	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0090	5907	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0091	5907	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0092	5907	1	0	0	0	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0093	5907	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479