JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELFN2_chr22_37362960_37432479	0/0	t0094	5907	1	0	0	0	0	1	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0095	5907	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0096	5907	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0097	5906	1	1	0	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0098	5910	1	0	0	1	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELFN2_chr22_37362960_37432479	0/0	t0099	5907	1	0	1	0	0	0	copy fasta	ELFN2	chr22	37362960	37432479
ELK1_chrX_47630521_47655563	1/1	t0001	1590	256	74	40	107	11	22	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0002	1590	4	0	0	0	0	4	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0003	1608	3	0	3	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0004	1590	3	0	0	3	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0005	1590	2	0	2	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0006	1590	1	0	0	0	0	1	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0007	1590	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0008	1590	1	1	0	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0009	1590	1	1	0	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0010	1590	1	0	1	0	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0011	1591	1	0	0	0	0	1	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0012	1599	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK1_chrX_47630521_47655563	0/0	t0013	1596	1	0	0	1	0	0	copy fasta	ELK1	chrX	47630521	47655563
ELK3_chr12_96189375_96274824	0/0	t0001	2973	122	33	20	58	1	10	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	1/0	t0002	2978	91	17	10	40	7	16	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/1	t0003	2973	29	8	10	0	3	7	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0004	2978	22	4	2	16	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0005	2973	21	1	11	9	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0006	2973	19	14	1	0	0	4	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0007	2978	10	4	3	0	3	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0008	2973	8	8	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0009	2978	7	0	6	0	0	1	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0010	2974	5	0	1	4	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0011	2978	4	0	3	0	1	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0012	2978	2	0	1	0	1	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0013	2973	2	0	2	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0014	2973	1	0	1	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0015	2992	1	0	0	0	0	1	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0016	2973	1	0	0	1	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0017	2978	1	0	0	0	0	1	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0018	2973	1	0	0	1	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0019	2973	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0020	2973	1	0	1	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0021	2973	1	0	0	1	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0022	2978	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0023	2973	1	0	1	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0024	2978	1	1	0	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK3_chr12_96189375_96274824	0/0	t0025	2973	1	0	1	0	0	0	copy fasta	ELK3	chr12	96189375	96274824
ELK4_chr1_205602943_205637011	0/0	t0001	8992	82	4	11	59	4	4	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0002	8992	59	7	4	40	1	7	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	1/0	t0003	8993	53	23	15	11	1	2	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0004	8992	52	0	9	34	1	8	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0005	8994	23	5	10	1	3	4	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0006	8993	15	0	4	7	0	4	copy fasta	ELK4	chr1	205602943	205637011