JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELK4_chr1_205602943_205637011	0/0	t0007	8989	7	7	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0008	8995	7	4	2	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0009	8992	6	0	0	6	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0010	8993	6	0	3	3	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0011	8990	5	0	0	2	0	3	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0012	8992	5	5	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0013	8994	5	5	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0014	8993	5	0	2	2	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0015	8992	4	4	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0016	8993	4	4	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/1	t0017	8992	4	0	2	0	1	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0018	8990	3	0	0	0	0	3	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0019	8992	3	0	0	3	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0020	8991	3	1	2	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0021	8992	3	1	1	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0022	8992	3	3	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0023	8995	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0024	8993	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0025	8991	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0026	8993	2	0	2	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0027	8991	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0028	8992	2	0	0	2	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0029	8992	2	0	2	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0030	8993	2	0	2	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0031	8995	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0032	8993	2	0	0	2	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0033	8992	2	2	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0034	8992	2	0	0	2	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0035	8993	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0036	9030	1	0	0	0	1	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0037	8974	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0038	8990	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0039	8990	1	0	1	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0040	8990	1	0	1	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0041	8992	1	1	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0042	8991	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0043	8989	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0044	8991	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0045	8991	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0046	8994	1	1	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0047	9030	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0048	8992	1	0	0	0	1	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0049	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0050	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0051	8989	1	1	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0052	8992	1	1	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0053	8993	1	1	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0054	8992	1	1	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0055	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0056	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011