JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELK4_chr1_205602943_205637011	0/0	t0057	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0058	8994	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0059	8993	1	0	1	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0060	8993	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0061	8993	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0062	8994	1	0	1	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0063	8993	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0064	8993	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0065	8993	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0066	8995	1	0	0	0	1	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0067	8994	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0068	8996	1	1	0	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0069	8992	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0070	8991	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0071	8992	1	0	0	0	0	1	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0072	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0073	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0074	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0075	8992	1	0	1	0	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0076	8992	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELK4_chr1_205602943_205637011	0/0	t0077	8993	1	0	0	1	0	0	copy fasta	ELK4	chr1	205602943	205637011
ELL2_chr5_95880098_95966851	0/0	t0001	3906	101	29	14	43	5	10	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	1/1	t0002	3904	82	17	22	28	3	10	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0003	3904	71	4	13	48	0	6	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0004	3906	16	0	2	12	0	2	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0005	3905	8	7	1	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0006	3907	6	2	1	3	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0007	3908	3	2	1	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0008	3906	3	3	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0009	3907	3	0	2	0	0	1	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0010	3906	3	3	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0011	3906	2	0	0	2	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0012	3905	2	2	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0013	3906	2	2	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0014	3904	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0015	3904	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0016	3904	1	0	0	1	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0017	3904	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0018	3905	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0019	3906	1	0	0	0	0	1	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0020	3905	1	0	0	1	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0021	3906	1	1	0	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0022	3906	1	0	1	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0023	3906	1	0	0	1	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0024	3906	1	0	0	1	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL2_chr5_95880098_95966851	0/0	t0025	3904	1	0	1	0	0	0	copy fasta	ELL2	chr5	95880098	95966851
ELL3_chr15_43767620_43781966	1/1	t0001	562	266	56	44	121	11	32	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	t0002	562	100	26	12	55	1	6	copy fasta	ELL3	chr15	43767620	43781966
ELL3_chr15_43767620_43781966	0/0	t0003	562	6	6	0	0	0	0	copy fasta	ELL3	chr15	43767620	43781966
ELL_chr19_18437663_18527070	0/0	t0001	2102	121	56	26	21	5	13	copy fasta	ELL	chr19	18437663	18527070