JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELL_chr19_18437663_18527070	1/1	t0002	2105	87	9	34	23	4	15	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0003	2105	7	6	1	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0004	2102	5	3	2	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0005	2102	4	4	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0006	2102	3	3	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0007	2102	3	3	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0008	2102	2	0	2	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0009	2102	2	2	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0010	2102	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0011	2103	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0012	2102	1	0	1	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0013	2102	1	0	1	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0014	2102	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0015	2105	1	0	1	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0016	2102	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0017	2102	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0018	2102	1	0	0	0	1	0	copy fasta	ELL	chr19	18437663	18527070
ELL_chr19_18437663_18527070	0/0	t0019	2102	1	1	0	0	0	0	copy fasta	ELL	chr19	18437663	18527070
ELMO1_chr7_36847906_37453864	0/0	t0001	2908	20	11	4	4	0	1	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0002	2907	17	10	5	0	0	2	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0003	2905	13	6	3	3	0	1	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	1/0	t0004	2909	13	2	7	2	0	1	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0005	2904	7	5	1	1	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0006	2906	4	3	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/1	t0007	2907	4	3	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0008	2908	4	2	2	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0009	2906	2	1	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0010	2908	1	1	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0011	2904	1	0	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0012	2905	1	0	0	0	0	1	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0013	2907	1	1	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0014	2907	1	0	1	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0015	2907	1	1	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0016	2907	1	1	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO1_chr7_36847906_37453864	0/0	t0017	2908	1	1	0	0	0	0	copy fasta	ELMO1	chr7	36847906	37453864
ELMO2_chr20_46361050_46411615	1/1	t0001	1504	79	14	17	30	2	14	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0002	1504	77	28	5	40	0	4	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0003	1504	57	0	13	32	4	8	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0004	1504	51	16	11	15	4	5	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0005	1504	36	23	1	12	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0006	1504	3	2	1	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0007	1504	2	1	0	1	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0008	1504	2	0	0	2	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0009	1504	1	0	0	0	0	1	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0010	1504	1	1	0	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0011	1504	1	0	0	1	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0012	1504	1	1	0	0	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO2_chr20_46361050_46411615	0/0	t0013	1504	1	0	0	1	0	0	copy fasta	ELMO2	chr20	46361050	46411615
ELMO3_chr16_67194131_67209004	1/1	t0001	324	317	91	57	124	11	32	copy fasta	ELMO3	chr16	67194131	67209004
ELMO3_chr16_67194131_67209004	0/0	t0002	324	11	3	1	0	1	6	copy fasta	ELMO3	chr16	67194131	67209004