JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELMOD1_chr11_107586147_107671779	0/1	t0001	1923	79	10	18	45	2	3	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0002	1927	64	22	11	21	3	7	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0003	1927	31	0	10	10	3	8	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0004	1927	28	27	1	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0005	1919	26	5	6	5	4	6	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0006	1927	22	0	0	21	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0007	1927	18	0	3	14	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0008	1927	13	0	3	9	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0009	1923	12	8	2	0	0	2	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0010	1931	11	6	3	1	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0011	1931	10	0	0	10	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0012	1915	4	4	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	1/0	t0013	1931	3	0	0	2	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0014	1923	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0015	1927	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0016	1923	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0017	1927	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0018	1903	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0019	1911	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0020	1919	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0021	1927	1	0	1	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0022	1931	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0023	1935	1	0	0	0	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0024	1935	1	0	0	0	0	1	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0025	1935	1	0	1	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0026	1915	1	0	0	1	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0027	1927	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0028	1931	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0029	1923	1	0	0	1	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0030	1939	1	0	0	1	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0031	1931	1	0	0	1	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0032	1919	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0033	1923	1	1	0	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD1_chr11_107586147_107671779	0/0	t0034	1919	1	0	1	0	0	0	copy fasta	ELMOD1	chr11	107586147	107671779
ELMOD2_chr4_140519168_140558770	0/1	t0001	3522	163	26	27	84	4	21	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0002	3524	70	9	12	43	2	4	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0003	3522	46	6	0	40	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	1/0	t0004	3518	40	23	8	3	0	5	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0005	3523	10	1	5	0	0	4	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0006	3522	9	0	5	4	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0007	3523	7	7	0	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0008	3524	5	4	1	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0009	3522	4	3	1	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0010	3518	3	2	1	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0011	3522	1	1	0	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0012	3522	1	1	0	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0013	3522	1	0	1	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0014	3523	1	0	0	0	0	1	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0015	3522	1	0	0	1	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0016	3522	1	1	0	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770