JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELMOD2_chr4_140519168_140558770	0/0	t0017	3522	1	0	0	1	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0018	3522	1	0	0	1	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0019	3518	1	0	1	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0020	3518	1	1	0	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0021	3518	1	1	0	0	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0022	3522	1	0	0	1	0	0	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD2_chr4_140519168_140558770	0/0	t0023	3522	1	0	0	0	0	1	copy fasta	ELMOD2	chr4	140519168	140558770
ELMOD3_chr2_85349769_85396748	1/1	t0001	1219	323	68	68	127	17	41	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0002	1219	25	3	3	19	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0003	1210	19	7	5	4	1	2	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0004	1219	3	3	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0005	1219	3	0	0	3	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0006	1219	3	3	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0007	1219	2	2	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0008	1219	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0009	1219	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0010	1219	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0011	1219	1	0	0	0	0	1	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0012	1219	1	0	0	1	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0013	1219	1	0	1	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0014	1219	1	0	1	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELMOD3_chr2_85349769_85396748	0/0	t0015	1219	1	1	0	0	0	0	copy fasta	ELMOD3	chr2	85349769	85396748
ELN_chr7_74023173_74074907	0/0	t0001	1223	262	39	55	135	8	25	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0002	1224	31	9	3	14	2	3	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0003	1224	29	4	4	11	2	8	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0004	1224	22	21	1	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0005	1223	18	4	1	9	2	2	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0006	1224	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0007	1224	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0008	1223	1	1	0	0	0	0	copy fasta	ELN	chr7	74023173	74074907
ELN_chr7_74023173_74074907	0/0	t0009	1223	1	0	0	1	0	0	copy fasta	ELN	chr7	74023173	74074907
ELOA2_chr18_47027527_47040621	0/0	t0001	834	246	34	51	125	6	30	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	1/1	t0002	834	152	37	29	65	9	10	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0003	834	8	1	1	4	1	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0004	835	7	1	0	6	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0005	834	6	6	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0006	833	6	2	2	0	2	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0007	834	6	6	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0008	834	3	0	0	3	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0009	834	2	2	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0010	834	2	2	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0011	834	1	1	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0012	834	1	0	0	0	0	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0013	834	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0014	833	1	0	0	0	0	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0015	834	1	1	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0016	834	1	0	0	0	0	1	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0017	834	1	0	1	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0018	834	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA2_chr18_47027527_47040621	0/0	t0019	834	1	1	0	0	0	0	copy fasta	ELOA2	chr18	47027527	47040621