JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELOA2_chr18_47027527_47040621	0/0	t0020	834	1	0	0	1	0	0	copy fasta	ELOA2	chr18	47027527	47040621
ELOA_chr1_23738471_23767059	1/0	t0001	2520	314	62	54	150	13	34	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/1	t0002	2520	46	15	22	1	3	4	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0003	2520	5	5	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0004	2520	4	4	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0005	2521	4	0	0	4	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0006	2520	4	0	0	4	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0007	2520	3	1	2	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0008	2520	3	3	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0009	2520	3	0	1	0	2	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0010	2520	2	1	1	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0011	2520	2	2	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0012	2520	1	0	0	1	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0013	2520	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0014	2520	1	0	1	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0015	2520	1	0	0	1	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0016	2520	1	0	1	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0017	2520	1	0	0	0	0	1	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0018	2520	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0019	2520	1	1	0	0	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0020	2520	1	0	0	1	0	0	copy fasta	ELOA	chr1	23738471	23767059
ELOA_chr1_23738471_23767059	0/0	t0021	2520	1	0	0	0	0	1	copy fasta	ELOA	chr1	23738471	23767059
ELOB_chr16_2766414_2782280	1/0	t0001	618	94	12	4	68	2	7	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/1	t0002	617	89	1	28	43	7	9	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0003	617	57	7	10	33	3	4	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0004	618	51	37	7	5	0	2	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0005	617	50	11	17	11	1	10	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0006	617	30	7	10	6	0	7	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0007	618	21	2	3	14	1	1	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0008	618	11	10	0	1	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0009	618	8	4	0	0	0	4	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0010	618	7	1	3	0	2	1	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0011	617	4	1	0	3	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0012	618	4	0	0	4	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0013	618	3	3	0	0	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0014	617	3	0	0	3	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0015	617	1	0	0	0	0	1	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0016	617	1	1	0	0	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0017	618	1	1	0	0	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0018	618	1	0	0	1	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0019	618	1	0	0	1	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOB_chr16_2766414_2782280	0/0	t0020	618	1	0	0	1	0	0	copy fasta	ELOB	chr16	2766414	2782280
ELOC_chr8_73940119_73977191	1/1	t0001	1677	273	65	37	135	6	28	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0002	1677	78	12	18	27	4	17	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0003	1677	31	4	12	10	1	4	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0004	1677	5	0	0	5	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0005	1725	3	3	0	0	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0006	1677	3	0	0	3	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0007	1677	3	3	0	0	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0008	1677	2	2	0	0	0	0	copy fasta	ELOC	chr8	73940119	73977191