JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELOC_chr8_73940119_73977191	0/0	t0009	1677	1	0	1	0	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0010	1677	1	0	0	1	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0011	1677	1	0	0	0	1	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0012	1677	1	0	0	1	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0013	1677	1	0	0	0	0	1	copy fasta	ELOC	chr8	73940119	73977191
ELOC_chr8_73940119_73977191	0/0	t0014	1677	1	1	0	0	0	0	copy fasta	ELOC	chr8	73940119	73977191
ELOF1_chr19_11548046_11564230	0/0	t0001	753	72	11	12	36	4	9	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0002	755	45	0	9	20	3	13	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0003	753	31	2	10	15	3	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0004	735	25	23	2	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0005	739	20	13	2	0	0	5	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0006	745	18	1	0	16	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0007	763	16	0	1	14	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0008	749	15	11	1	1	2	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0009	765	14	0	1	13	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0010	757	13	0	4	4	1	4	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0011	753	9	0	0	9	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0012	751	8	2	6	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0013	743	7	7	0	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0014	759	7	0	1	3	2	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0015	737	6	0	6	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0016	741	6	5	1	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0017	755	6	1	1	1	2	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0018	753	6	3	3	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0019	735	5	1	2	2	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0020	767	5	0	1	4	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0021	769	5	0	2	2	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0022	753	4	0	0	4	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0023	751	4	3	1	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0024	757	4	0	1	3	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0025	759	4	0	1	1	0	2	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0026	729	3	0	0	3	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0027	759	3	0	1	2	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0028	761	3	0	2	0	1	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0029	761	3	0	0	3	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/1	t0030	761	3	0	2	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0031	773	3	0	0	3	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0032	731	2	0	1	0	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0033	737	2	1	1	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0034	743	2	2	0	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0035	749	2	0	1	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0036	751	2	0	0	1	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0037	757	2	0	0	0	0	2	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	1/0	t0038	759	2	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0039	757	2	0	1	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0040	763	2	1	0	0	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0041	775	2	0	0	2	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0042	733	1	0	0	0	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0043	737	1	1	0	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0044	739	1	1	0	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230