JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELOF1_chr19_11548046_11564230	0/0	t0045	741	1	1	0	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0046	741	1	1	0	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0047	741	1	1	0	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0048	753	1	0	0	0	0	1	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0049	753	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0050	751	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0051	757	1	0	1	0	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0052	753	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0053	759	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0054	757	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0055	767	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0056	763	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0057	771	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0058	755	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0059	759	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOF1_chr19_11548046_11564230	0/0	t0060	759	1	0	0	1	0	0	copy fasta	ELOF1	chr19	11548046	11564230
ELOVL1_chr1_43358401_43373011	1/1	t0001	627	378	94	75	160	12	35	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	t0002	627	2	0	0	0	1	1	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	t0003	627	1	1	0	0	0	0	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	t0004	627	1	1	0	0	0	0	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	t0005	627	1	0	0	0	1	0	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL1_chr1_43358401_43373011	0/0	t0006	627	1	0	1	0	0	0	copy fasta	ELOVL1	chr1	43358401	43373011
ELOVL2_chr6_10975759_11049305	0/1	t0001	3098	112	28	6	59	3	15	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0002	3098	53	1	18	29	0	5	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0003	3098	40	0	1	39	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	1/0	t0004	3098	39	0	12	19	4	3	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0005	3098	37	11	13	1	5	7	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0006	3098	18	16	2	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0007	3098	11	0	11	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0008	3098	10	10	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0009	3098	9	0	0	9	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0010	3098	9	9	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0011	3098	7	0	0	7	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0012	3098	6	5	1	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0013	3098	5	3	0	0	0	2	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0014	3098	5	0	0	2	0	3	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0015	3098	4	0	0	4	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0016	3098	2	2	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0017	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0018	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0019	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0020	3098	1	0	1	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0021	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0022	3098	1	0	1	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0023	3098	1	0	0	1	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0024	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0025	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0026	3098	1	0	0	0	0	1	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0027	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL2_chr6_10975759_11049305	0/0	t0028	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305