JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELOVL2_chr6_10975759_11049305	0/0	t0029	3098	1	1	0	0	0	0	copy fasta	ELOVL2	chr6	10975759	11049305
ELOVL3_chr10_102221299_102234589	1/1	t0001	588	432	96	79	204	12	39	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL3_chr10_102221299_102234589	0/0	t0002	588	1	0	1	0	0	0	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL3_chr10_102221299_102234589	0/0	t0003	588	1	1	0	0	0	0	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL3_chr10_102221299_102234589	0/0	t0004	588	1	0	0	0	0	1	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL3_chr10_102221299_102234589	0/0	t0005	588	1	1	0	0	0	0	copy fasta	ELOVL3	chr10	102221299	102234589
ELOVL4_chr6_79909814_79952553	1/0	t0001	2069	178	28	43	81	5	20	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0002	2067	78	4	12	42	2	18	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0003	2069	27	25	2	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/1	t0004	2069	22	2	8	3	4	4	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0005	2069	11	11	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0006	2067	10	10	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0007	2069	5	2	2	0	1	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0008	2069	4	4	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0009	2082	2	2	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0010	2069	2	2	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0011	2069	2	0	0	2	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0012	2069	1	1	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0013	2069	1	1	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0014	2067	1	0	0	0	0	1	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0015	2069	1	0	0	1	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0016	2069	1	1	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0017	2067	1	0	0	0	0	1	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0018	2069	1	0	0	1	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0019	2069	1	1	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0020	2069	1	0	1	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0021	2069	1	0	0	1	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0022	2069	1	1	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0023	2069	1	0	0	1	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL4_chr6_79909814_79952553	0/0	t0024	2069	1	1	0	0	0	0	copy fasta	ELOVL4	chr6	79909814	79952553
ELOVL5_chr6_53262404_53353950	1/1	t0001	1866	270	55	64	113	12	24	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0002	1866	21	11	6	0	2	2	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0003	1866	5	0	0	5	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0004	1866	4	0	0	3	1	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0005	1866	3	0	3	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0006	1866	3	3	0	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0007	1866	2	0	0	2	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0008	1866	2	0	0	2	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0009	1866	2	2	0	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0010	1866	1	1	0	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0011	1866	1	1	0	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0012	1866	1	1	0	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0013	1866	1	1	0	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0014	1866	1	0	0	0	1	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0015	1866	1	0	1	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0016	1866	1	0	0	1	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL5_chr6_53262404_53353950	0/0	t0017	1866	1	1	0	0	0	0	copy fasta	ELOVL5	chr6	53262404	53353950
ELOVL6_chr4_110040846_110203615	1/0	t0001	5773	81	9	26	32	3	10	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0002	5775	30	3	6	17	2	2	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0003	5777	22	0	6	15	0	1	copy fasta	ELOVL6	chr4	110040846	110203615