JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELOVL6_chr4_110040846_110203615	0/0	t0054	5773	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0055	5774	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0056	5777	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0057	5773	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0058	5773	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0059	5770	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0060	5763	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0061	5773	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0062	5773	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0063	5773	1	0	0	0	0	1	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0064	5773	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0065	5774	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0066	5773	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0067	5773	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/1	t0068	5773	1	0	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0069	5773	1	0	1	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0070	5775	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0071	5763	1	0	0	1	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0072	5772	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0073	5775	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0074	5775	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0075	5776	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0076	5772	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0077	5773	1	0	1	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0078	5774	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0079	5775	1	0	0	0	0	1	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0080	5773	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0081	5774	1	0	0	0	1	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL6_chr4_110040846_110203615	0/0	t0082	5775	1	1	0	0	0	0	copy fasta	ELOVL6	chr4	110040846	110203615
ELOVL7_chr5_60746791_60849269	0/1	t0001	3029	73	11	16	32	6	7	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0002	3029	47	2	5	30	0	10	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0003	3029	43	34	2	2	3	2	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0004	3030	23	0	3	16	2	2	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0005	3029	18	6	7	0	3	2	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0006	3030	12	10	0	0	0	2	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0007	3029	9	0	3	0	1	5	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0008	3029	8	8	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	1/0	t0009	3029	4	0	2	0	0	1	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0010	3029	4	0	3	0	1	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0011	3029	2	1	1	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0012	3029	2	0	2	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0013	3029	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0014	3029	1	0	1	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0015	3029	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0016	3030	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0017	3029	1	0	0	0	0	1	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0018	3029	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0019	3029	1	0	0	1	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0020	3029	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269
ELOVL7_chr5_60746791_60849269	0/0	t0021	3029	1	1	0	0	0	0	copy fasta	ELOVL7	chr5	60746791	60849269