Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCC1_chr16_15944616_16148053	0/0	t0022	1909	1	0	1	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0023	1909	1	0	0	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0024	1909	1	0	0	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0025	1910	1	0	0	1	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0026	1910	1	0	0	0	0	1	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0027	1910	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	0/0	t0028	1896	1	1	0	0	0	0	copy fasta	ABCC1	chr16	15944616	16148053
ABCC2_chr10_99777640_99857594	1/0	t0001	1169	223	53	36	97	6	30	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0002	1169	56	3	10	37	3	3	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/1	t0003	1169	40	14	12	8	1	4	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0004	1169	4	4	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0005	1169	4	4	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0006	1169	3	0	3	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0007	1169	2	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0008	1169	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0009	1169	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0010	1169	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	t0011	1169	1	0	0	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC3_chr17_50629881_50697253	1/0	t0001	1110	313	72	55	144	8	33	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/1	t0002	1110	20	4	8	3	4	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	t0003	1110	6	6	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	t0004	1110	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	t0005	1110	1	0	0	0	0	1	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	t0006	1110	1	0	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC4_chr13_95014835_95306451	0/1	t0001	1878	82	18	15	34	2	12	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0002	1877	79	11	12	41	4	11	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0003	1878	11	10	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0004	1878	10	9	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0005	1877	10	9	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0006	1878	10	10	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0007	1877	9	0	6	1	1	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0008	1877	7	0	1	5	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0009	1877	6	5	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	1/0	t0010	1878	5	2	0	2	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0011	1878	2	2	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0012	1878	2	1	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0013	1878	2	2	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0014	1877	2	0	0	2	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0015	1878	1	0	0	1	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0016	1878	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0017	1878	1	0	0	1	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0018	1878	1	0	0	0	1	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0019	1878	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0020	1878	1	0	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0021	1877	1	0	0	0	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0022	1877	1	0	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0023	1878	1	1	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0024	1878	1	0	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	t0025	1878	1	0	0	1	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC5_chr3_183914934_184022884	0/1	t0001	1477	140	14	34	73	5	13	copy fasta	ABCC5	chr3	183914934	184022884