Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGPAT4_chr6_161124967_161279061	0/0	t0021	6789	3	2	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0022	6789	3	3	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0023	6788	3	0	2	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0024	6783	2	2	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0025	6789	2	2	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0026	6788	2	2	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0027	6783	2	0	0	0	0	2	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0028	6783	2	0	0	2	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0029	6787	2	2	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0030	6787	2	2	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0031	6788	2	0	1	0	1	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0032	6790	2	2	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0033	6783	2	0	2	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0034	6780	2	2	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0035	6787	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0036	6789	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0037	6788	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0038	6788	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0039	6788	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0040	6783	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0041	6793	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0042	6793	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0043	6782	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0044	6782	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0045	6783	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0046	6783	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0047	6783	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0048	6783	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0049	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0050	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0051	6788	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0052	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0053	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0054	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0055	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0056	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0057	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0058	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0059	6783	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0060	6783	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0061	6783	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0062	6782	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0063	6783	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0064	6783	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0065	6783	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0066	6783	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0067	6787	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0068	6787	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0069	6787	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0070	6783	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061