JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELP4_chr11_31504767_31795324	0/0	t0013	6818	3	0	2	0	1	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0014	6826	3	3	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0015	6824	3	0	0	3	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0016	6825	3	0	1	2	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0017	6826	3	3	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0018	6820	3	0	0	2	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0019	6829	3	3	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0020	6827	3	3	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0021	6827	2	0	0	1	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0022	6820	2	1	0	0	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0023	6818	2	0	1	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0024	6825	2	2	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0025	6823	2	0	0	2	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0026	6816	2	1	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0027	6825	2	1	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0028	6829	2	0	1	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0029	6828	2	0	0	2	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0030	6826	2	2	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0031	6819	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0032	6825	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0033	6816	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0034	6829	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0035	6819	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0036	6827	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0037	6827	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0038	6827	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0039	6828	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0040	6827	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0041	6822	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0042	6822	1	0	0	0	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0043	6821	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0044	6826	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0045	6825	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0046	6823	1	0	0	0	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0047	6826	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0048	6824	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0049	6826	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0050	6824	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0051	6829	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0052	6825	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0053	6826	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0054	6826	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0055	6828	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0056	6815	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0057	6823	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0058	6826	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0059	6827	1	0	0	0	1	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0060	6830	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0061	6830	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0062	6829	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324