JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELP4_chr11_31504767_31795324	0/0	t0063	6827	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0064	6827	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0065	6826	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0066	6825	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0067	6829	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0068	6830	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0069	6826	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0070	6822	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0071	6827	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0072	6827	1	0	0	0	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0073	6826	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0074	6825	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0075	6827	1	0	1	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0076	6827	1	0	0	0	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0077	6825	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0078	6828	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0079	6819	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0080	6819	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0081	6817	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0082	6827	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	t0083	6826	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP5_chr17_7247215_7264937	1/1	t0001	589	316	80	67	120	16	31	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0002	589	54	2	3	49	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0003	589	21	0	2	9	2	8	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0004	589	5	4	1	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0005	589	2	0	0	0	0	2	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0006	586	2	0	0	2	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0007	589	2	2	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0008	589	2	0	0	2	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0009	589	1	0	0	0	0	1	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0010	589	1	0	0	1	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0011	589	1	0	0	1	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0012	589	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0013	586	1	0	1	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0014	589	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0015	589	1	0	0	1	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	t0016	589	1	0	0	1	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP6_chr3_47490640_47518712	0/1	t0001	552	187	18	42	102	8	16	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	1/0	t0002	552	151	40	27	59	6	18	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	t0003	552	33	31	2	0	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	t0004	552	1	0	0	1	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	t0005	552	1	1	0	0	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	t0006	552	1	0	1	0	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELSPBP1_chr19_47989632_48030154	0/0	t0001	408	234	61	47	92	13	21	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	1/1	t0002	408	129	17	31	58	3	18	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0003	408	10	9	1	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0004	408	6	5	1	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0005	408	2	2	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0006	408	2	2	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0007	408	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154