JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ELSPBP1_chr19_47989632_48030154	0/0	t0008	408	1	0	0	0	0	1	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0009	408	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0010	424	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	t0011	408	1	0	0	1	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
EMB_chr5_50391192_50446288	1/0	t0001	3219	130	22	25	56	8	18	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0002	3220	59	7	6	41	1	4	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/1	t0003	3220	36	6	3	21	1	4	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0004	3220	34	20	7	7	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0005	3220	24	14	4	0	1	5	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0006	3220	15	0	2	10	1	2	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0007	3220	12	0	6	0	1	5	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0008	3220	5	5	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0009	3220	4	4	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0010	3220	3	3	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0011	3220	3	3	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0012	3220	2	1	1	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0013	3220	2	0	0	2	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0014	3220	2	0	0	2	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0015	3219	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0016	3220	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0017	3219	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0018	3219	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0019	3219	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0020	3219	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0021	3219	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0022	3219	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0023	3219	1	0	1	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0024	3219	1	0	1	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0025	3220	1	0	1	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0026	3220	1	0	0	0	1	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0027	3220	1	1	0	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0028	3220	1	0	1	0	0	0	copy fasta	EMB	chr5	50391192	50446288
EMB_chr5_50391192_50446288	0/0	t0029	3219	1	0	0	1	0	0	copy fasta	EMB	chr5	50391192	50446288
EMC10_chr19_50471507_50495871	0/0	t0001	8648	31	0	12	11	3	5	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	1/0	t0002	8651	24	0	6	12	2	3	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0003	8652	12	2	3	3	0	4	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0004	8646	8	7	1	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0005	8649	8	0	3	4	0	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0006	8653	7	0	0	6	0	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0007	8652	6	0	0	3	0	3	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0008	8662	5	1	2	0	1	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0009	8664	5	0	3	0	1	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0010	8664	5	5	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0011	8650	5	0	3	0	1	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0012	8651	5	0	3	1	1	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0013	8664	4	3	1	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0014	8664	4	4	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0015	8647	4	0	1	2	0	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0016	8653	4	0	0	3	0	1	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0017	8654	4	0	3	1	0	0	copy fasta	EMC10	chr19	50471507	50495871