JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMC10_chr19_50471507_50495871	0/0	t0168	8653	1	0	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0169	8653	1	1	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0170	8649	1	1	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0171	8651	1	1	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0172	8653	1	0	0	1	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC10_chr19_50471507_50495871	0/0	t0173	8652	1	1	0	0	0	0	copy fasta	EMC10	chr19	50471507	50495871
EMC1_chr1_19210660_19256524	1/0	t0001	3659	125	32	35	34	7	16	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0002	3680	113	13	14	75	2	9	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0003	3664	15	11	0	2	0	2	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/1	t0004	3677	12	7	2	0	0	2	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0005	3680	12	0	7	0	4	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0006	3660	10	1	2	6	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0007	3679	9	8	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0008	3681	8	2	0	5	0	1	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0009	3681	7	0	0	5	0	2	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0010	3679	6	1	1	4	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0011	3681	4	3	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0012	3659	4	0	0	4	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0013	3682	3	0	1	0	0	2	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0014	3678	2	0	1	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0015	3681	2	0	2	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0016	3680	2	2	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0017	3659	2	1	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0018	3659	2	0	0	0	0	2	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0019	3675	2	0	0	2	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0020	3682	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0021	3682	1	0	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0022	3680	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0023	3681	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0024	3680	1	0	1	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0025	3664	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0026	3681	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0027	3659	1	0	0	1	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0028	3659	1	0	0	0	1	0	copy fasta	EMC1	chr1	19210660	19256524
EMC1_chr1_19210660_19256524	0/0	t0029	3659	1	1	0	0	0	0	copy fasta	EMC1	chr1	19210660	19256524
EMC2_chr8_108438624_108494196	1/0	t0001	2634	123	16	28	64	6	8	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/1	t0002	2633	89	0	10	56	6	16	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0003	2633	55	14	10	17	5	9	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0004	2633	27	21	3	0	0	3	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0005	2634	10	9	1	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0006	2633	10	1	4	1	0	4	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0007	2633	5	5	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0008	2634	4	4	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0009	2633	4	4	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0010	2634	4	0	3	0	0	1	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0011	2634	3	3	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0012	2633	3	0	0	0	0	3	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0013	2633	3	0	0	3	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0014	2633	2	1	1	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0015	2633	2	2	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196