JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMC2_chr8_108438624_108494196	0/0	t0016	2634	2	2	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0017	2633	2	2	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0018	2633	2	1	1	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0019	2634	2	0	0	0	1	1	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0020	2633	1	1	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0021	2633	1	0	1	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0022	2633	1	1	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0023	2634	1	0	0	1	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0024	2633	1	1	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0025	2634	1	1	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0026	2633	1	0	1	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0027	2634	1	0	1	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0028	2633	1	1	0	0	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0029	2633	1	0	0	0	0	1	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0030	2634	1	0	0	1	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC2_chr8_108438624_108494196	0/0	t0031	2633	1	0	0	1	0	0	copy fasta	EMC2	chr8	108438624	108494196
EMC3_chr3_9957682_9991841	1/0	t0001	1568	66	6	17	33	0	9	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0002	1588	47	5	12	23	3	4	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0003	1568	19	1	2	15	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0004	1588	16	16	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0005	1574	12	9	3	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/1	t0006	1574	11	2	2	5	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0007	1575	10	7	3	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0008	1574	9	9	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0009	1588	8	3	1	4	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0010	1588	7	0	3	2	0	2	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0011	1574	6	1	0	5	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0012	1570	6	0	0	4	1	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0013	1568	6	4	0	1	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0014	1568	5	2	1	1	1	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0015	1569	5	0	0	4	1	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0016	1574	4	0	2	2	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0017	1573	4	0	1	0	0	3	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0018	1574	4	2	2	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0019	1574	4	0	0	4	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0020	1565	4	0	0	3	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0021	1590	4	0	0	4	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0022	1572	3	0	0	3	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0023	1568	3	0	0	2	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0024	1599	3	0	0	3	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0025	1589	3	1	2	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0026	1586	3	0	3	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0027	1588	3	2	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0028	1573	2	2	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0029	1578	2	0	2	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0030	1574	2	2	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0031	1568	2	1	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0032	1587	2	1	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0033	1568	2	2	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0034	1574	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841