JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMC3_chr3_9957682_9991841	0/0	t0035	1588	1	0	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0036	1589	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0037	1574	1	0	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0038	1600	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0039	1575	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0040	1578	1	0	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0041	1556	1	0	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0042	1567	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0043	1572	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0044	1568	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0045	1569	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0046	1598	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0047	1599	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0048	1597	1	0	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0049	1599	1	0	1	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0050	1592	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0051	1596	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0052	1596	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0053	1592	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0054	1588	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0055	1586	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0056	1589	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0057	1588	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0058	1574	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0059	1568	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0060	1588	1	0	0	1	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0061	1612	1	0	0	0	0	1	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0062	1608	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0063	1575	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0064	1588	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0065	1568	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0066	1568	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0067	1588	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC3_chr3_9957682_9991841	0/0	t0068	1590	1	1	0	0	0	0	copy fasta	EMC3	chr3	9957682	9991841
EMC4_chr15_34220016_34235156	1/1	t0001	468	272	72	66	87	11	34	copy fasta	EMC4	chr15	34220016	34235156
EMC4_chr15_34220016_34235156	0/0	t0002	466	79	16	5	49	2	7	copy fasta	EMC4	chr15	34220016	34235156
EMC4_chr15_34220016_34235156	0/0	t0003	468	6	6	0	0	0	0	copy fasta	EMC4	chr15	34220016	34235156
EMC4_chr15_34220016_34235156	0/0	t0004	466	3	0	1	0	1	1	copy fasta	EMC4	chr15	34220016	34235156
EMC4_chr15_34220016_34235156	0/0	t0005	468	1	0	1	0	0	0	copy fasta	EMC4	chr15	34220016	34235156
EMC4_chr15_34220016_34235156	0/0	t0006	468	1	0	1	0	0	0	copy fasta	EMC4	chr15	34220016	34235156
EMC6_chr17_3663812_3674665	1/0	t0001	324	408	83	79	181	16	48	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/0	t0002	324	3	3	0	0	0	0	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/0	t0003	324	1	0	0	1	0	0	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/0	t0004	324	1	0	1	0	0	0	copy fasta	EMC6	chr17	3663812	3674665
EMC6_chr17_3663812_3674665	0/1	t0005	324	1	0	0	0	0	0	copy fasta	EMC6	chr17	3663812	3674665
EMC7_chr15_34079017_34106862	1/1	t0001	341	408	91	77	182	14	42	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	t0002	341	1	0	1	0	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC7_chr15_34079017_34106862	0/0	t0003	341	1	1	0	0	0	0	copy fasta	EMC7	chr15	34079017	34106862
EMC8_chr16_85773624_85804544	0/1	t0001	1332	133	31	27	41	11	22	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0002	1333	108	3	21	69	2	13	copy fasta	EMC8	chr16	85773624	85804544