JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMC8_chr16_85773624_85804544	0/0	t0003	1333	59	6	7	40	2	4	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0004	1332	14	14	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0005	1335	10	10	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0006	1332	9	0	0	7	2	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0007	1333	9	0	0	8	0	1	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0008	1333	8	0	0	8	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0009	1333	5	5	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0010	1334	4	4	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0011	1332	4	0	4	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0012	1334	4	4	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0013	1332	3	0	0	3	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0014	1334	3	0	0	3	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0015	1334	3	0	0	1	0	2	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0016	1333	3	3	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0017	1332	3	1	0	2	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0018	1332	3	0	2	1	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0019	1332	3	0	0	2	0	1	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0020	1333	2	0	0	2	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0021	1334	2	2	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0022	1334	2	2	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0023	1334	2	2	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0024	1333	1	0	1	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0025	1334	1	1	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0026	1332	1	0	0	0	1	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0027	1334	1	0	0	0	0	1	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0028	1332	1	1	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0029	1332	1	1	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0030	1332	1	0	1	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0031	1334	1	0	1	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	1/0	t0032	1334	1	0	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0033	1332	1	0	0	1	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0034	1334	1	1	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC8_chr16_85773624_85804544	0/0	t0035	1332	1	1	0	0	0	0	copy fasta	EMC8	chr16	85773624	85804544
EMC9_chr14_24133965_24146591	0/0	t0001	212	218	47	34	114	7	16	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	1/1	t0002	212	197	43	43	70	9	30	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	t0003	212	6	5	1	0	0	0	copy fasta	EMC9	chr14	24133965	24146591
EMC9_chr14_24133965_24146591	0/0	t0004	212	1	1	0	0	0	0	copy fasta	EMC9	chr14	24133965	24146591
EMCN_chr4_100390341_100523022	0/0	t0001	3183	68	7	18	33	0	10	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0002	3182	67	8	25	15	6	13	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	1/0	t0003	3181	21	6	6	7	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0004	3183	15	14	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0005	3182	15	14	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0006	3181	13	2	2	3	0	6	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0007	3180	10	7	3	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0008	3180	5	4	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0009	3181	5	5	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0010	3184	4	0	2	1	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0011	3183	4	4	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0012	3183	3	0	2	0	1	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/1	t0013	3182	3	0	1	0	0	1	copy fasta	EMCN	chr4	100390341	100523022