Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGPAT4_chr6_161124967_161279061	0/0	t0071	6788	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0072	6789	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0073	6788	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0074	6793	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0075	6793	1	0	0	1	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0076	6789	1	0	0	0	0	1	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0077	6790	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0078	6790	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0079	6790	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0080	6790	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0081	6790	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0082	6780	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0083	6780	1	0	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0084	6790	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT5_chr8_6703642_6766503	0/0	t0001	4143	150	17	37	77	10	9	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0002	4143	75	3	12	44	1	15	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0003	4143	64	5	17	26	2	14	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0004	4144	21	3	1	17	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0005	4144	8	8	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0006	4141	6	6	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0007	4145	6	6	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	1/0	t0008	4143	4	0	0	3	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0009	4143	4	0	0	3	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0010	4143	4	4	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0011	4144	3	3	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0012	4141	3	3	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0013	4143	3	3	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0014	4143	3	1	2	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0015	4143	3	3	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0016	4143	3	3	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/1	t0017	4143	2	0	1	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0018	4143	2	0	0	2	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0019	4143	2	0	1	0	1	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0020	4143	2	1	1	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0021	4143	2	1	1	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0022	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0023	4143	1	0	1	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0024	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0025	4143	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0026	4143	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0027	4143	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0028	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0029	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0030	4143	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0031	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0032	4143	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0033	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0034	4143	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0035	4143	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0036	4143	1	0	0	0	1	0	copy fasta	AGPAT5	chr8	6703642	6766503